McCabe, K., Sheehan, E., Albino, I. X., and Hernandez, M., (2011) LacI-ts regulated expression as an in situ intracellular biomolecular thermometer, Applied and Environmental Microbiology, In Press.
Martins, C.F., Portelli,, L., McCabe, K., Hernandez, M., and Barnes, F., (2010) Reduction of the Earth's Magnetic Field Inhibits Growth Rates of Model Cancer Cell Lines. Bioelectromagnetics, doi: 10.1002/bem.20606.
Coz, E., Artinano, B., Clark, L., Hernandez, M., Robinson, A., Casuccio, G, Lersch, T, and Pandis, S., (2010) Seasonal Variations of Fine Primary Biogenic Aerosol Particles in an Urban Area in the Northeastern US, Atmospheric Environment, 44:3952-3962
McCabe, K., and Hernandez, M., (2010) Molecular Thermometry, Pediatric Research, 67:469.
K. Ryan, K.M. McCabe, N. Clements, L. Erickson, M. Hernandez, and S. Miller, (2010) Bioaerosol Inactivation Using Ultraviolet Germicidal Irradiation in Flow-Through Control Devices, Aerosol Science and Technology, 44:541
Gutierrez-Padilla, G.D., Bielefleldt, A., Ovtchinnikov, S., Hernandez, M. and Silverstein, J., (2010) Biogenic Sulfuric Acid Attack on Different Types of Commercially Produced Concrete Sewer Pipes. Cement and Concrete Research, 40:293
Rodriguez, M., Walker, J., Pace, N. and Hernandez, M. (2010) Molecular Source Tracking of Bioaerosols in the Quarantined Katrina Flood Zone. Aerosol Science and Techology. 44:1.
Kujundzic, E., Greenberg, A.R., Fong, R., Moore, B., Kujundzic, D. and Hernandez, M. (2010) Biofouling Potential of Industrial Fermentation Broth During Microfiltration, Journal of Membrane Science, 349:44.
Pontius, F. A, Amy, G.L.. and Hernandez M. (2009) Fluorescent microspheres as virion surrogates in low-pressure membrane studies. Journal of Membrane Science, 335:43
Kujundzic, E., Cobry, K., Greenberg, A., and Hernandez M. (2008) Use of Ultrasonic Sensors for Monitoring Membrane Fouling and Cleaning Journal of Engineered Fibers and Fabrics 3: 35.
Fierer, N., Liu, Z., Rodriguez, M., Knight, R., Henn, M., and Hernandez, M. (2008) Short-Term Temporal Variability in Airborne Bacteria and Fungal Populations Applied and Environmental Microbiology, 74(1):200
Sievers, R.E., Quinn, B.P., Cape, S.P., Searles, J.A., Braun, C.S., Bhagwat, P., Rebits, L.G., McAdams, D.H., Berger, J.L., Lindsay, L., Hernandez, M., Kisich, K.O., Iacovangelo, T., Kristensen, D., Chen, D. (2007) Near-Critical fluid micronization of stabilized vaccines, antibiotics, and anti-virals, Journal of Supercritical Fluids, 42:385.
Goebes M. D. , Hildemann L.M., Kujundzic, E., and Hernandez, M. (2007) Real-Time PCR for Detection of Airborne Aspergillus, Journal of Environmental Monitoring, 9:599-609.
Kujundzic, E., Miller S., and Hernandez, M. (2007). Ultraviolet Germicidal Irradiation Inactivation of Airborne Fungal Spores and Bacteria in Upper-Room Air and HVAC In-Duct Configurations. Journal of Environmental Engineering and Science, 6:1-9.
Fonseca, A.C., Summers, R.S., Greenberg, A.R. and Hernandez, M. (2007) Modeling Associations of Extra-Cellular Polysaccharides, Natural Organic Matter and Soluble Microbial Products with Membrane Biofouling, Environmental Science and Technology., 41 (7), 2491-2497.
Kujundzic, E., Evans, E., Fonseca, C.M., Greenberg, A.R., Hernandez, M. (2007) Ultrasonic Monitoring of Early-Stage Biofilm Growth on Polymeric Surfaces Journal of Microbiological Methods, 68 (3): 458-467.
Kujundzic, E., Hernandez, M., and Miller, S.L. (2006). UV Air Cleaners and Upper-Room Air UV Germicidal Irradiation for Controlling Airborne Bacteria and Fungal Spores. Journal of Occupational and Environmental Hygiene, 3(10):536.
Peccia, J. and Hernandez, M. (2006) Incorporating polymerase chain reaction-based identification, population characterization, and quantification of microorganisms into aerosol science: A review. Atmospheric Environment, 40:3941.
Kujundzic, E., Hernandez M., and Miller, S.L. (2006) Particle size distributions and concentrations of airborne endotoxin using novel collection methods in homes during the winter and summer seasons. Indoor Air, 16:216.
Dow S.M., von Gunten U., Lively, G., Chandrakanth, M, Amy, G., and Hernandez M. (2006) The Impact of Selected Water Quality Parameters on the Inactivation of Bacillus subtilis Spores Using Monochloramine and Ozone, Water Research, 40:373.
Angenent, L., Kelly, S., St. Amand, A., Pace, N., and Hernandez, M. (2005) Molecular identification of potential Pathogens in the air and water of a hospital therapy pool. Proceedings of the National Academy of Sciences. 102: 4860.
Xu, P., Kujundzic, E., J. Peccia, Schafer, M. P., .Moss, G., Hernandez., M., and Miller S. L. (2005) Impact of Environmental Factors on Efficacy of Upper-Room Air Ultraviolet Germicidal Irradiation for Inactivating Airborne Mycobacteria, Environmental Science and Technology, 39: 9656.
Bilgin, A.A., Silverstein S., and Hernandez, M. (2005) The Effects of Soluble Ferri-Hydroxide Complexes on Microbial Neutralization of Acid Mine Drainage. Environmental Science and Technology, 39: 7826.
Fabian, M.P., Miller, S.L., Reponen, T., and Hernandez, M. (2005) Ambient bioaerosol indices for indoor air quality assessments of flood reclamation. Journal of Aerosol Science. 36: 763.
Kujundzic, E., Angenent, L., Zander, D., Henderson, D., Miller, S.L., and Hernandez, M. (2005) Effects of Hybrid HEPA-UV on Airborne Bacteria Concentrations in an Indoor Therapy Pool Building. Journal of the Air and Waste Management Association. 55:210.
Peccia J. and Hernandez M. (2004) UV-induced inactivation rates for airborne Mycobacterium bovis BCG&. Journal of Occupational and Environmental Hygiene. 1:430.
Xu, P., J. Peccia, M P. Fabian, A. Barker, J. Martyny, K. Fennelly, Hernandez., M., and S. L. Miller. (2003) Inactivation of Bacteria and Mycobacteria Using Ultraviolet Germicidal Irradiation of Upper-Room Air. Atmsopheric Environment. 37(3):405.
Gruden, C. L., Abu-Dalo, M., Fevig, S. and Hernandez, M. 2003) CTC (5-cyano-2,3-ditolyl tetrazolium chloride) reduction in mesophilic anaerobic digesters: measuring redox behavior, differentiating abiotic reduction, and comparing FISH response as an activity indicator. Journal of Microbiological Methods, 52(1):59.
Bhupathiraju, V.K., Krauter, P. Holman, H-Y N., Conrad, M.E., Daley, P.F., Templeton, A.S., Hunt, J.R., Hernandez, M, and Alvarez-Cohen, L. (2002) Assessment of in-situ bioremediation at a refinery waste-contaminated site and an aviation gasoline contaminated site. Journal of Biodegradation. 13(2):79.
Peccia, J. and Hernandez, M. (2002) Rapid Immunoassays for Detection of UV-Induced Cyclobutane Pyrimidine Dimers in Whole Bacterial Cells. Applied and Environmental Microbiology: 68:2542.
Hernandez M., Marchand E.A., Roberts D.J., and Peccia J. (2002) In-Situ Assessment of Active Thiobacillus Species in Corroding Concrete Sewers using Fluorescent RNA Probes. Biodeterioration and Biodegration 49(4):274.
Gruden, C. L., and Hernandez, M. (2002) Anaerobic Digestion of Aircraft Deicing Fluids: Interactions and toxicity of corrosion inhibitors and surfactants. Water Environment Research. 74(2):149.
Hernandez M. and Swartz M. (2001) Review of Airborne Microbiological Contamination on Commercial Aircraft. Centers for Disease Control and Prevention, National Institutes for Occupational Health and Safety, US Govt. Report (CDC/NIOSH DO # 0009936697).
Peccia, J., Werth, H., Miller, S. L., and Hernandez., M. (2001) The Effect of Relative Humidity on the UV-induced Induced Inactivation of Airborne Bacteria. Aerosol Science and Technology 35(3):728.
Peccia, J., and Hernandez, M. (2001) Photoreactivation in Airborne Mycobacterium parafortuitum. Applied and Environmental Microbiology: 67(9):4225.
Gruden, C. L., Dow S. M., and Hernandez, M. (2001) Fate and Toxicity of Aircraft Deicing Fluid Additives through Anaerobic Digestion. Water Environment Research. 73(1):72.
Fonseca, A.C., Summers, R.S., and Hernandez, M. (2001) Comparative Measures of Microbial Biomass, Activity, and Community Structure in Drinking Water Biofilters Under Different Operating Conditions. Water Research 35(16):3817.
Pillard, D.A., Cornell, J. S., DuFresne, D.U., and Hernandez, M., (2001) Toxicity of Benzotriazole and Benzotriazole Derivatives to Three Aquatic Species Water Research 35(2):557.
Biesterfeld S., Figueroa, L., Hernandez, M. and Russell, P. (2001) Correlation of Ammonia Removal Rates To Nitrifying Bacterial Populations In A Full-Scale Nitrifying Trickling Filter Using Fluorescent In Situ Hybridization;. Water Environment Research. 73(3):329.
Cornell, J. S., Pillard, D.A., and Hernandez, M., (2000) Comparative Measures of the Toxicity of Component Chemicals in Aircraft Deicing Fluids. Environmental Chemistry and Toxicology.19(6):1465.
Peccia, J., Marchand, E.A., Silverstein, J. and Hernandez, M. (2000) Development and Application of Small-Subunit rRNA Probes for Assessment of Selected Thiobacillus Species and Members of the Genus Acidiphilium. Applied and Environmental Microbiology. 66(7):3065.
Hernandez, M., Miller, S.L., Landfear, D., and Macher, J.M. (1999) A Combined Fluorochrome Method for Quantitation of Metabolically Active and Inactive Airborne Bacteria. Aerosol Science and Technology, 30:145.
Oerther, D.B., De Los Reyes, F., Hernandez, M. and Raskin, L. (1999) Simultaneous Olignucleotide Probe Hybridization and Immunostaining for the In Situ Detection of Gordona Species in Activated Sludge. Journal of the Federation of European Microbiological Sciences, 29:129.
Bupathiraju, V.K., Hernandez, M., Krauter, P., and Alvarez-Cohen, L. (1999) A New Direct Microscopy Based Method for Evaluating In-Situ Bioremediation. Journal of Hazardous Materials B67: 299.
Bupathiraju, V.K., Hernandez, M. Landfear, D. and Alvarez-Cohen, L. (1999) Application of a Tetrazolium Dye as an Indicator of Anaerobic Microbiological Activity. Journal of Microbiological Methods. 37:231.
De Los Reyes, F., De Los Reyes, L., Hernandez, M. and Raskin, L. (1998) Quantification of Gordona amarae Strains in Foaming Activated Sludge and Anaerobic Digester Systems using Oligonucleotide Hybridization Probes. Applied and Environmental Microbiology, 64(7):2503.
De Los Reyes, F., Oerther, D.B., De Los Reyes, L., Hernandez, M. and Raskin, L. (1998) Characterization of Filamentous Foaming in Activated Sludge Systems using Oligonucleotide Hybridization Probes and Antibody Probes. Water Science and Technology, 37(4-5):485.
De Los Reyes, F., De Los Reyes, L., Hernandez, M. and Raskin, L. (1998) Identification and Quantification of Gordona amarae Strains in Activated Sludge Systems using Comparative rRNA Sequence Analysis and Phylogenetic Hybridization Probes. Applied and Environmental Microbiology, 37(10):521.
Edwards, M., Courtney, B., Hepler, P. and Hernandez, M. (1997) Beneficial Discharge of Iron Coagulation Sludge to Sewers. ASCE, Journal of Environmental Engineering, 123(10):
Hernandez, M., and Jenkins, D., (1994) The Fate of Nocardia in Anaerobic Digestion. Water Environ Research, 66(6): 828.
Hernandez, M., Jenkins, D. and Beaman, B. L., (1994) Mass and Viability Estimations of Nocardia in Activated Sludge and Anaerobic Digesters Using Conventional Stains and Immunofluorescent Methods. Water Science & Technology, 29(27):249.
Alina M. Handorean, Kevin M. McCabe, Keeley T. Hernandez, Alison L. Ling, Norman R. Pace, and Mark T. Hernandez. Phylogenetic Analysis of Bioaerosols Recovered from Commercial Office Environments Reclaimed from Flood Damage. accepted manuscript 2011- Indoor Air Conference, June 3-6, 2011, Austin, Texas
Alison L. Ling, Norman R. Pace, and Mark T. Hernandez. Community Characterization of Microbially-Induced Concrete Corrosion in Wastewater Infrastrucure. American Society for Microbiology. May 21-24, 2011, New Orleans, LA
Kevin M. McCabe, Jane Turner, TL Nicholson, Mark T. Hernandez, and Tod J. Merkel. Regulation and Role of Aerosol Tolerance Genes of B. pertussis, Presenting to the Pediatric Academic Societies meetinds, April 2001, Denver, CO
Alina M. Handorean , Kevin M. McCabe, Alison Ling and Mark T. Hernandez. Seasonal Variations in Microbial Phylogeny and the Atmospheric Pools of Primary Biopolymers in Temperate Sub-Alpine Settings, Colorado USA. platform presentation, AAAR 30th Conference, October 25-29, 2010, Portland, Oregon
Jane Turner, Kevin M. McCabe, and Mark T. Hernandez. Novel Paradigm for Bioaerosol Testing of Antimicrobial Textiles and Filter Material Based Disinfection. AAAR 30th Conference, October 25-29, 2010, Portland, Oregon
Kevin M. McCabe, Jane Turner, Tod Merkel and Mark T. Hernandez. Viability of aerosolized Bordatella pertussis and indications of gene level control of putative environmental survival factors. AAAR 30th Conference, October 25-29, 2010, Portland, OregonAlina M. Handorean, Mark T. Hernandez. Seasonal Phospholipid Associations with Fine Airborne Particulate Matter in Pristine Areas of the Mountain West United States- platform presentation IAC2010, August 29-September 3, 2010, Helsinki, Finland
Alina M. Handorean, Kevin McCabe, Alison Ling, Jim Smith, Christine Weidenmeyer and Mark T. Hernandez. Comparison of Protein and Carbohydrate Associations with Fine Particulate Matter in Sub- Alpine Aerosols from Pristine and Urban Environments. platform presentation AAAR Specialty Conference, March 22-26, 2010, San Diego California
Muna Abu-Dalo, Nathan Heick, Alina M. Handorean and Mark T. Hernandez. Stability of Benzotriazole Derivatives with Free Cu, Zn, and Co and Metal-Containing Enzymes: Binding and Interaction of Methylbenzotriazoles with Superoxide Dismutase and Cobalamin. Gordon Research Conference - June 13-18, 2010, Salve Regina University, Newport, RI
Hernandez, M. and Abu-Dalo, M. , Removing Metals from Solutions Using Metal Binding Compounds and Sorbents Therefor, US Provisional Patent, July 2002, Full Patent Filed (July, 2003) and Pending (US ENVIRONMENTAL FASTRACK) expected 2007.