J. E. Knelman, T. M Legg, S. P. O'Neill, C. L. Washenberger, A. Gonzalez, C. C. Cleveland and D. R. Nemergut (2012). Bacterial community structure and function change in association with colonizer plants during early primary succession in a glacier forefield. Soil Biology & Biochemistry 46: 172-180. Link
J. W. Leff, D. R. Nemergut, A. S. Grandy, S. P. O'Neill, K. Wickings, A. R. Townsend, C. C. Cleveland (2011). The effects of soil bacterial community structure on decomposition in a tropical rain forest. Ecosystems Link
L.F. Stanish, D. R. Nemergut, and D. M. McKnight (2011). Hydrologic processes influence diatom community composition in Dry Valley streams. JNABS 30: 1057-1073. Link
C. Violle, D. R. Nemergut, Z. Pu, L. Jiang (2011). Phylogenetic limiting similarity and competitive exclusion. Ecology Letters. 14: 782-787. Link
S. K. Schmidt, C. C. Cleveland, D. R. Nemergut, S. C. Reed, A. J. King, P. Sowell (2011). Estimating phosphorus availability for microbial growth in an emerging landscape. Geoderma 163:135-140. Link
P. Yilmaz, R. Kottmann, D. Field et al. (2011). Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS). Nature Biotechnology 29: 415-420. Link
D. R. Nemergut, E. K. Costello, M. Hamady, C. Lozupone, L. Jiang, S. K. Schmidt, N. Fierer, A. R. Townsend, C. C. Cleveland, L. Stanish, R. Knight (2011). Global patterns in the biogeography of bacterial taxa. Environmental Microbiology. 13: 135-144 Link
D. R. Nemergut, C. C. Cleveland, W. R. Wieder, C. L. Washenberger and A. R. Townsend (2010). Plot-scale manipulations of organic matter inputs to soils correlate with shifts in microbial community composition in a lowland tropical rain forest. Soil Biology & Biochemistry 42: 2153-2160. Link
S. C. Reed, A. R. Townsend, C. C. Cleveland, D. R. Nemergut (2010). Microbial community shifts influence patterns in tropical forest nitrogen fixation. Oecologia. 164: 521-531. Link
N. Fierer, D. R. Nemergut, R. Knight, J. M. Craine (2010). Changes through time: integrating microorganisms into the study of succession. Research in Microbiology. 161: 635-642. Link
J. Kuczynski, E. K. Costello, D. R. Nemergut, J. Zaneveld, C. L. Lauber, D. Knights, O. Koren, N. Fierer, S. T. Kelley, R. E. Ley, J. I. Gordon, R. Knight (2010). Direct sequencing of the human microbiome readily reveals community differences. Genome Biology. 11: 210. Link
N. Mladenov, Y. Zheng, M. P. Miller, D. R. Nemergut, T. Legg, B. Simone, C. Hageman, M. M. Rahman, K. M. Ahmed, D. M. McKnight (2010). Dissolved organic matter sources and consequences for iron and arsenic mobilization in Bangladesh Aquifers. Environmental Science and Technology. 44: 123-128. Link
S. R. Sattin, C. C. Cleveland, E. Hood, S. C. Reed, A. J. King, S. K. Schmidt, M. S. Robeson, N. Ascarrunz and D. R. Nemergut (2009). Functional shifts in unvegetated, perhumid, recently deglaciated soils do not correlate with shifts in soil bacterial community composition. The Journal of Microbiology. 47:673-681. Link
S. K. Schmidt, D. R. Nemergut, A. E. Miller, K. R. Freeman, A. J. King, and A. Seimon (2009). Microbial activity and diversity during extreme freeze-thaw cycles in periglacial soils, 5400 m elevation, Cordillera Vilcanota, Perú. Extremophiles 13: 807-816. Link
S. K. Schmidt, S. C. Reed, D. R. Nemergut, A. S. Grandy, C. C. Cleveland, M. N. Weintraub, A. W. Hill*, E. K. Costello, A. F. Meyer, and J. C. Neff (2008). The earliest stages of ecosystem succession in high-elevation (5000 metres above sea level), recently deglaciated soils. Proceedings of the Royal Society 275: 2793-2802. Link
D. R. Nemergut, A. R. Townsend, S. R. Sattin, K. R. Freeman, N. Fierer, J. C. Neff, W. D. Bowman, C. S. Schadt, M. N. Weintraub, and S. K. Schmidt (2008). The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling. Environmental Microbiology 10: 3093-3105. Link
D. R. Nemergut, M. S. Robeson, R. F. Kysela, A. P. Martin, S. K. Schmidt, and R. Knight. 2008. Insights and inferences about integron evolution from genomic data. BMC Genomics 9:261 Link
L. Jiang, Z. Pu and D. R. Nemergut. 2008. On the importance of the negative selection effect for the relationship between biodiversity and ecosystem functioning. Oikos 117: 488-493. Link
J. R. Zaneveld, D. R. Nemergut and R. Knight. 2008. Are all horizontal transfers created equal? Prospects for mechanism based studies of HGT patterns. Microbiology 154: 1-15. Link
C. C. Cleveland, D. R. Nemergut, A. R. Townsend and S. K. Schmidt. 2007. Increases in soil respiration following labile carbon additions linked to rapid shifts in soil microbial community composition. Biogeochemistry 82: 229-240. Link
S. K. Schmidt, E. K. Costello, D. R. Nemergut, C. C. Cleveland, S. C. Reed, M. N. Weintraub, A. F. Meyer and A. M. Martin. 2007. Biogeochemical consequences of rapid microbial turnover and seasonal succession in soil. Ecology 88: 1379-1385. Link
D. R. Nemergut, T. Barkay and J. Coombs. 2007. Mobile gene elements in environmental microbial commmunities. In C.J. Hurst, R.L. Crawford, J.L. Garland, D.A. Lipson, A. Mills, and L.D. Stetzenbach, (eds.), Manual of Environmental Microbiology, 3rd edition, ASM Press, Washington, D.C. Link
D. R. Nemergut, S. P. Anderson, C. C. Cleveland, A. P. Martin, A. E. Miller, A. Seimon and S. K. Schmidt. 2007. Microbial community succession in an unvegetated, recently-deglaciated soil. Microbial Ecology 53: 110-122. Link
D. R. Nemergut, E. K. Costello, A. F. Meyer, M. Pescador, M. Weintraub, and S. K. Schmidt. 2005. Structure and function of alpine and arctic soil microbial communities. Research in Microbiology 156: 775-784. Link
A. P. Martin, E. K. Costello, A. Meyer, D. R. Nemergut and S. K. Schmidt (2004). The rate and pattern of cladogenesis in microbes. Evolution 58: 946-955. Link
D. R. Nemergut, A. P. Martin and S. K. Schmidt (2004). Integron diversity in heavy metal contaminated mine tailings and inferences about integron evolution. Applied and Environmental Microbiology 70: 1160-1168. Link
D. R. Nemergut and S. K. Schmidt (2002). Disruption of narH, narJ, and moaE inhibits heterotrophic nitrification in Pseudomonas strain M19. Applied and Environmental Microbiology 68: 6462-6465. Link
D. R. Nemergut, K. G. Wunch, R. M. Johnson and J. W. Bennett (2000). Benzo[a]pyrene removal by Marasmiellus troyanus in soil microcosms. Journal of Industrial Microbiology and Biotechnology 25: 116-119. Link
D. R. Nemergut, R. M. Johnson, K. G. Wunch and J. W. Bennett (2000). Extraction and quantification of benzo[a]pyrene in soil by reversed phase thin layer chromatography. Journal of Liquid Chromatography and Related Technologies 23: 579-586. Link